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DDX39B / UAP56

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B

Involved in nuclear export of spliced and unspliced mRNA. Assembling component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cytoplasm via the TAP/NFX1 pathway. May undergo several rounds of ATP hydrolysis during assembly of TREX to drive subsequent loading of components such as ALYREF/THOC and CHTOP onto mRNA. The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. Also associates with pre-mRNA independent of ALYREF/THOC4 and the THO complex. Involved in the nuclear export of intronless mRNA; the ATP-bound form is proposed to recruit export adapter ALYREF/THOC4 to intronless mRNA; its ATPase activity is cooperatively stimulated by RNA and ALYREF/THOC4 and ATP hydrolysis is thought to trigger the dissociation from RNA to allow the association of ALYREF/THOC4 and the NXF1-NXT1 heterodimer. Involved in transcription elongation and genome stability.Splice factor that is required for the first ATP-dependent step in spliceosome assembly and for the interaction of U2 snRNP with the branchpoint. Has both RNA-stimulated ATP binding/hydrolysis activity and ATP-dependent RNA unwinding activity. Even with the stimulation of RNA, the ATPase activity is weak. Can only hydrolyze ATP but not other NTPs. The RNA stimulation of ATPase activity does not have a strong preference for the sequence and length of the RNA. However, ssRNA stimulates the ATPase activity much more strongly than dsRNA. Can unwind 5' or 3' overhangs or blunt end RNA duplexes in vitro. The ATPase and helicase activities are not influenced by U2AF2; the effect of ALYREF/THOC4 is reported conflictingly with [PubMed:23299939] reporting a stimulatory effect.

Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Synonyms: DDX39B, BAT1, DEAD box protein UAP56, HLA-B associated transcript 1, UAP56, ATP-dependent RNA helicase p47, D6S81E, Spliceosome RNA helicase BAT1
Target Sequences: NM_004640 NP_004631.1 Q13838

Publications (2)

1
The Cellular DExD/H-Box RNA Helicase UAP56 Co-localizes With the Influenza A Virus NS1 Protein. Chiba S, Hill-Batorski L, Neumann G, Kawaoka Y. Frontiers in microbiology. 2018 September;9:2192. [Full Text Article] [PubMed:30258431] [PMC:PMC6144874]
2
Identification of DDX39A as a Potential Biomarker for Unfavorable Neuroblastoma Using a Proteomic Approach. Kohei Otake, Keiichi Uchida, Shozo Ide, Yuhko Kobayashi, Issei Kobayashi, Masato Kusunoki. Pediatric blood & cancer. 2016 Feburary;63:221-7. [Full Text Article] [PubMed:26469522] Related Antibodies: LS-C110147.

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100 µg/$420; 20 µg/$323; 1 mg/$1,355
DDX39B / UAP56 Protein - Western validation with an anti-DDK antibody * L: Control HEK293 lysate R: Over-expression lysate
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48.8 kDa
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DDX39B / UAP56 Protein - 12.5% SDS-PAGE of human BAT1 stained with Coomassie Blue
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DDX39B / UAP56 Protein - Purified recombinant protein DDX39B was analyzed by SDS-PAGE gel and Coomassie Blue Staining
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48.8 kDa
20 µg/$1,107
DDX39B / UAP56 Protein - Purified recombinant protein DDX39B was analyzed by SDS-PAGE gel and Coomassie Blue Staining
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48.8 kDa
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48.8 kDa
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DDX39B / UAP56 Protein - Western validation with an anti-DDK antibody * L: Control HEK293 lysate R: Over-expression lysate
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100 µg/$494
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The data on this page has been compiled from LifeSpan internal sources, the National Center for Biotechnology Information (NCBI), and The Universal Protein Resource (UniProt).